PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s01280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 248aa    MW: 27859.4 Da    PI: 8.8803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s01280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-1476122354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+E+rRR+riNs ++eLr+llP +      K +Ka+ L k+v+ +k+L
  Vradi0007s01280.1  76 KNHKEAEKRRRERINSHLDELRTLLPCN-----SKTDKASLLAKVVQRVKEL 122
                        58*************************8.....7************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1468130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.96773122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-1276125No hitNo description
PfamPF000102.0E-1176122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1477131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-1379128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.3E-4162225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MHHSPMDNSH LLQFLPNTTT TTTTTTTSNP FFHTPPHTTN IMHLSNNSSS NHFYPFHVSQ  60
ITPTPSHHDR ALAAMKNHKE AEKRRRERIN SHLDELRTLL PCNSKTDKAS LLAKVVQRVK  120
ELKQQTSEIT ELETVPSETD EITVLSTGGD YGSDGRLVFK ASLCCEDRSD LIPDLIEILN  180
SLHLKTLKAE MATLGGRTRN VLVVAADKEH SIESINFLQN SLKSLLDRSN SSDRSKRRRG  240
LDRRLMS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491152.10.0PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-77BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0S3RWZ61e-157A0A0S3RWZ6_PHAAN; Uncharacterized protein
STRINGGLYMA19G30910.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.16e-72bHLH family protein